FastQCFastQC Report
Sun 21 May 2023
EGAF00007925189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470350
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG19670.41819921335175936No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15490.32932922291910277No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG14060.29892633145529923No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT11680.24832571489316466No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC10670.22685234399914955No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT10480.22281279897948336No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG10360.22026150738811523No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC9910.21069416392048476No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9430.2004889975550122No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT9000.19134686935260978No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT7560.1607313702561922No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7320.15562878707345593No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT6620.14074625279047517No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA6230.13245455511852877No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5990.12735197193579248No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCA5620.1194854895290741No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCA5250.1116190071223557No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGAC5200.11055596895928564No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5060.10757946210268948No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5060.10757946210268948No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGT4940.10502817051132136No Hit

[OK]Adapter Content

Adapter graph