FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470350
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21990.4675241841182098No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC19780.4205378973105135No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15280.32486446263420854No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT14210.3021154459445094No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG13170.2800042521526523No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA11760.25002657595407674No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA11050.23493143403848196No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT10910.23195492718188584No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG10520.22366322950993942No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA10280.21856064632720315No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10070.21409588604230892No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC9780.2079302646965026No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8610.18305517168066332No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG7800.16583395343892846No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7750.1647709152758584No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT6410.13628149250558094No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC6290.13373020091421284No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6270.1333049856489848No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC5780.12288721165089826No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5700.12118635058998618No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGGAC5630.1196980971616881No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA5300.11268204528542575No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTGGC5080.10800467736791751No Hit

[OK]Adapter Content

Adapter graph