FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486086
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG19860.4085696769707418No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16410.3375945820286945No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG15410.31702209074114457No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT12420.2555103417913702No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC12020.2472813452763503No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG11010.22650312907592485No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC10060.2069592623527524No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT10030.20634208761412587No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT9420.19379286792872044No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9190.18906119493258394No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT8320.1711631275124155No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8250.169723053122287No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA6650.1368070670622071No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT6390.13145821932744411No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCA5820.11973189929354065No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5660.11644030068753265No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCA5610.11541167612315517No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5550.11417732664590217No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGT5480.11273725225577366No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGAC5030.1034796311763762No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGG4980.1024510066119987No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4940.10162810696049669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)