FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486086
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCCAACATGGACATCGATGGTATTAACACC20220.4159757738342598No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16250.3343029834226865No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT15570.32031368934715254No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG14480.29788967384372317No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA12760.26250498882913725No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA12210.2511901186209847No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT12170.2503672189694828No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG11070.22773747855317786No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA10160.20901651148150738No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC10040.20654781252700138No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9910.20387338865961988No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9400.19338141810296944No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7950.16355130573602203No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG7770.15984825730426303No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC6810.14009866566821508No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC6400.13166394424031963No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6220.12796089580856063No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT6180.12713799615705862No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGGAC6050.12446357228967714No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5970.12281777298667315No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA5730.11788037507766116No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5490.11294297716864918No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTGGC5150.10594833013088219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)