FastQCFastQC Report
Wed 31 May 2023
EGAF00007925193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474299
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG19190.404597100141472No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15900.33523157333243375No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG13890.292853242363994No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT11380.2399330380203205No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG10500.2213793408799091No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC10340.21800594139983429No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT9910.20893993029713326No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC9160.19312712023428258No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8990.18954288328670313No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT8910.18785618354666572No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8420.17752514763893662No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT8130.17141086108130105No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT6610.13936356602059038No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA6510.13725519134554365No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5910.12460494329526312No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCA5900.12439410582775842No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGT5410.11406306992002935No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5040.10626208362235637No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCA4970.10478622134982363No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4920.10373203401230027No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA4870.10267784667477688No Hit

[OK]Adapter Content

Adapter graph