FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474299
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22220.4684808527953886No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC19510.41134389910162156No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15670.3303823115798262No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT14520.30613600281678854No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG13710.28905816794890987No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA11930.25152909873307766No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA11700.24667983698047014No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG10640.22433106542497455No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT10540.2222226907499278No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA9770.20598820575206778No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9490.20008475666193687No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9400.19818721945439483No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC9100.19186209542925453No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG8120.17120002361379635No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7590.16002563783604856No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC6770.1427369655006652No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6320.13324927946295478No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC6280.1324059295929361No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT6160.12987587998288No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA5910.12460494329526312No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGGAC5580.11764730686760883No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5550.1170147944650948No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC4780.10078030946723482No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAGAG4770.10056947199973013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)