FastQCFastQC Report
Wed 31 May 2023
EGAF00007925195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474796
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11310.23820756703931795No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10000.2106167701497064No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8120.1710208173615616No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7530.15859442792272893No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7220.15206530804808802No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7010.14764235587494418No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6450.13584781674656063No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6230.13121424780326707No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG5420.11415428942114086No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5260.11078442109874556No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5030.10594023538530231No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4870.10257036706290702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)