FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474796
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22660.47725760115923466No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17360.3656307129798903No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12290.2588480105139892No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11320.23841818380946767No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8200.17270575152275924No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7130.15016975711674066No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6740.14195570308090213No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6490.13669028382715948No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6280.1322673316540156No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5450.11478613973158998No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5390.11352243911069175No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5250.11057380432859586No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5050.10636146892560173No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA4940.10404468445395496No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)