FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489583
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10910.22284270491418207No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10230.2089533337554613No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8540.17443416131687578No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8040.1642213884060517No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7520.1536001045787946No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7320.14951499541446497No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7140.14583839716656827No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6950.14195754346045514No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5540.11315752385193115No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG5460.11152348018619927No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5240.10702986010543668No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4900.10008517452607626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)