FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489583
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19340.39503005619067655No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13130.26818741663824114No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11130.22733632499494466No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8910.18199161327088562No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7690.1570724473684748No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7450.15217031637127923No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6780.1384852006707749No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6430.13133625963319806No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5950.1215319976388069No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5900.1205107203477245No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5530.11295326839371464No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5480.11193199110263224No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5330.108868159229385No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5160.1053958164397048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)