FastQCFastQC Report
Sun 21 May 2023
EGAF00007925199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477310
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10520.22040183528524437No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10050.21055498522972493No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8070.16907251052774927No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7810.16362531688001508No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7390.1548260040644445No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6590.1380654082252624No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6450.13513230395340556No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6380.1336657518174771No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG5520.11564811129035636No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5180.10852485805870399No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC4870.10203012717102095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)