FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477310
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21890.4586118036496198No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18310.38360813726927995No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12740.26691248873897466No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10880.22794410341287633No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8940.1872996585028598No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7430.1556640338564036No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6570.13764639332928286No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6540.13701787098531354No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6290.13178018478556913No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5240.10978190274664264No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5210.10915338040267332No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5210.10915338040267332No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5190.10873436550669377No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4920.1030776644109698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)