FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502104
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12650.2519398371652088No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11580.2306295110176378No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11200.22306135780635086No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9080.18083902936443444No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8850.17625830505233975No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8210.1635119417491197No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7630.15196055000557654No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5380.10714911651769354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)