FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404184
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15500.38348870811313657No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8540.21128990756685076No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGA8210.2031253092650872No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT6850.16947726777903133No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5340.13211804524671933No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5180.12815945213071275No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5130.1269223917819607No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC5000.12370603487520536No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC4890.12098450210795084No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4450.11009837103893277No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4300.1063871899926766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)