FastQCFastQC Report
Wed 31 May 2023
EGAF00007925204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404184
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19100.47255705322328445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15470.3827464719038854No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11710.2897195336777309No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8860.21920709379886388No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCGTG7990.19768224373057813No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC7030.17393068503453873No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC6960.17219880054628586No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5760.14250935217623656No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5480.13558181422322507No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5110.12642756764245985No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4950.12246897452645329No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4890.12098450210795084No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4360.10787166241117907No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4240.10490271757417413No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4080.10094412445816757No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT4070.10069671238841715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)