FastQCFastQC Report
Sun 21 May 2023
EGAF00007925205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417406
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16370.39218410851784596No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9030.21633613316531147No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGA8360.20028461497918096No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT7200.1724939267763281No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5490.13152661916695016No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5340.12793299569244332No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC5250.12577682160773923No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5140.12314149772643421No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC4950.11858957465872555No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4800.11499595118421872No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG4440.10637125484540232No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4360.10445465565899867No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4280.10253805647259502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)