FastQCFastQC Report
Wed 31 May 2023
EGAF00007925206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417406
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16230.38883005994163955No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11520.27599028284212496No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9270.2220859307245224No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCGTG8150.1952535421148714No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC7820.18734757047095635No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC7250.17369180126783035No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT6180.1480572871496816No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5640.135120242641457No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5500.1317661940652506No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5280.1264955463026406No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5140.12314149772643421No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4830.11571467587912009No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4770.11427722648931736No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4580.1097253034216087No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4570.10948572852330825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)