FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406423
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15310.37670112173769693No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8730.21480083558263188No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGA8230.20249838222738378No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT7200.17715532831557268No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5220.1284376130287902No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5190.12769946582747532No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5120.12597712235774058No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC5040.12400872982090089No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4360.10727739325776346No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC4340.10678529512355354No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4200.10334060818408407No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG4170.10260246098276918No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4170.10260246098276918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)