FastQCFastQC Report
Sun 21 May 2023
EGAF00007925208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406423
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19520.48028777898888597No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14940.36759730625481335No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11020.2711460719496682No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8990.2211981113273609No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCGTG8390.20643516730106318No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC7670.1887196344695059No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC7010.1724803960405784No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5540.136311183176149No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5430.1336046434379944No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5150.12671526955905546No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5110.12573107329063563No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5110.12573107329063563No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4800.11810355221038178No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4310.10604714792223865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)