FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478547
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC21660.45262011881800535No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG20660.43172352976823597No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC17350.3625558200134992No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15030.3140757334180342No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT14980.31303090396554567No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT14560.30425433656464257No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT13610.2844025769673616No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13100.2737453165519792No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11150.23299696790492888No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11050.23090730899995196No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT10000.20896589049769404No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG9500.19851759597280935No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8930.18660654021444079No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT8110.1694713371936299No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT7950.16612788294566677No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7090.1481568163628651No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6070.1268422955321003No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5750.12015538703617408No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5570.1163940010072156No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5090.10636363826332627No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5010.10469191113934473No Hit

[OK]Adapter Content

Adapter graph