FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478547
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT41980.8772388083093197No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT27200.5683872221537278No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC19620.40999107715647576No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT17220.35983926343702916No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT17140.3581675363130476No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC15930.33288266356282664No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC15130.3161653923230111No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13270.27729773669044006No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11590.2421914670868274No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11130.2325790361239335No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT10990.22965351365696576No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC8710.18200929062349153No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG8000.16717271239815526No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7600.1588140767782475No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC7390.15442579307779591No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7240.15129130472033048No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7210.1506644070488374No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7070.1477388845818697No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6490.13561886293300343No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5890.12308090950314181No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5760.12036435292667177No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5500.11493123977373172No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5170.10803536538730783No Hit

[OK]Adapter Content

Adapter graph