FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465381
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10190.21896037870046264No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8140.17491044971754327No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC6630.14246391666183192No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6480.13924075112649636No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6110.1312902761393353No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5430.11667859237914742No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4980.1070090957731407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)