FastQCFastQC Report
Wed 31 May 2023
EGAF00007925216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480707
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11290.23486240058913227No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9970.2074028462244153No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7750.16122086842920946No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7640.15893257223214974No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG7240.15061149515193248No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6540.13604961026155224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6250.13001682937839473No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6200.1289766947433676No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5520.11483086370699823No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5320.11067032516688961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)