FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529967
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13750.25945011670537976No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC11960.22567442878518854No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11770.22208929989980508No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11640.21963631697822697No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9940.18755884800374364No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG9900.18680408402787343No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9270.17491655140791784No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8490.16019865387844903No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8070.152273632131812No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC7520.1418956274635968No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7460.14076348149979148No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT7440.1403860995118564No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7400.13963133553598622No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7390.13944264454201866No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT6830.12887594887983592No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG6410.12095092713319887No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC6340.11963009017542602No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT6340.11963009017542602No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6240.11774318023575053No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5940.11208245041672406No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5790.10925208550721083No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT5370.10132706376057377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)