FastQCFastQC Report
Wed 31 May 2023
EGAF00007925220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529967
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29050.5481473374757296No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12340.2328446865559554No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC12140.22907086667660442No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12110.22850479369470175No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA10390.19604994273228335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10210.19265350484086743No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9100.17170880451046952No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8780.16567069270350795No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8390.15831174393877354No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG8380.158123052944806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8090.15265101411974707No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG7770.1466129023127855No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT7610.14359384640930473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7600.1434051554153372No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA7550.14246170044549944No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7230.13642358863853787No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG6420.1211396181271664No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG6300.11887532619955582No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC6280.11849794421162071No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6200.11698841625988032No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6120.11547888830813993No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5940.11208245041672406No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5890.11113899544688631No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5450.10283659171231416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)