FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532138
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14540.273237393307751No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12750.23959950238471975No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12180.2288879952192852No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC11760.22099530572896506No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG10030.18848494187597953No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9660.18153185827736415No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9590.18021641002897745No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7930.14902149442437865No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7840.14733020381931003No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7810.14676644028428715No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC7750.1456389132142414No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7710.1448872285008776No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7380.13868582961562603No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6810.1279743224501915No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT6770.12722263773682765No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT6630.12459174124005427No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC6410.12045747531655322No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6330.11895410588982558No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG6200.11651113057139313No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5630.1057996234059586No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5440.10222912101748043No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5350.10053783041241182No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5340.10034990923407086No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT5330.1001619880557299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)