FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532138
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG32960.6193882038117932No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12870.24185455652481125No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12020.2258812563658299No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC11960.22475372929578416No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10530.19788100079302737No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA10330.19412257722620824No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9200.17288748407368015No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8580.1612363710165408No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT8020.15071278502944724No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG8000.15033694267276532No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7990.15014902149442436No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7900.14845773088935577No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7780.1462026767492643No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG7670.14413554378751378No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7610.14300801671746802No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6850.1287260071635553No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG6690.1257192683101No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC6610.12421589888337237No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6460.121397081208258No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6140.1153836035013474No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG6120.11500776114466549No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5930.1114372587561873No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5930.1114372587561873No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5720.10749091401102721No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG5580.10486001751425383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)