FastQCFastQC Report
Wed 31 May 2023
EGAF00007925223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520515
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13980.26858015619146425No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11900.2286197323804309No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11880.22823549753609407No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC11830.2272749104252519No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9870.18961989568023976No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9790.18808295630289232No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG9600.18443272528169216No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7980.15330970289040663No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7900.15177276351305918No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7870.1511964112465539No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7320.14062995302729028No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT7110.13659548716175327No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7100.13640336973958483No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC7100.13640336973958483No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT7100.13640336973958483No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT7000.13448219551790055No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC6700.12871867285284766No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6150.11815221463358405No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG6130.1177679797892472No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5920.11373351392371016No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5650.10854634352516258No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5480.10528034734829927No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5320.10220646859360441No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT5220.10028529437192012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)