FastQCFastQC Report
Sun 21 May 2023
EGAF00007925225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490825
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16450.33515000254673255No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG14010.28543778332399533No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA11500.23429939387765497No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9490.19334793459990832No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8560.17440024448632405No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8070.16441705292110223No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7730.15748994040645853No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG7600.15484133856262414No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA7520.15321142973564916No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7140.14546936280751796No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6970.1420058065501961No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6910.14078337492996487No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5930.12081699179952123No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5570.11348240207813376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)