FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490825
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18090.36856313349971986No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16510.3363724341669638No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG15130.3082565069016452No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC14100.2872714307543422No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT12770.26017419650588297No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11920.24285641521927365No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG8750.17827127795038963No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8150.1660469617480772No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7490.15260021392553355No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7270.1481179646513523No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7030.14322823817042735No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6260.12754036571079305No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6230.12692914990067744No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5550.11307492487139001No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5160.10512911933988692No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA4950.10085060866907758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)