FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477008
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16240.340455505987321No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG14300.2997853285479489No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA10500.22012209438835406No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8740.18322543856706808No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8180.1714855935330225No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8100.16980847281387315No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA7760.16268070975748833No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG7640.16016502867876428No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7000.14674806292556938No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6680.14003958004897193No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6580.13794317915003523No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5850.12263945258779727No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5830.12222017240800993No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5710.11970449132928589No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5160.108174286385134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)