FastQCFastQC Report
Wed 31 May 2023
EGAF00007925228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477008
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23130.48489752792405993No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17050.3574363532687083No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15790.3310217019421058No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG15230.31928185690806027No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC12630.2647754335357059No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT12580.2637272330862376No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11110.23291013987186798No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG8170.17127595344312885No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8140.17064703317344782No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7270.15240834535269848No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6810.14276490121758964No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6510.13647569852077954No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6110.1280900949250327No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6070.127251534565458No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5270.11048032737396438No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5020.10523932512662261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)