FastQCFastQC Report
Wed 31 May 2023
EGAF00007925230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492292
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18950.38493414477586474No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16530.33577632787045086No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG16340.33191682984895143No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC13560.27544627985017023No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT13110.26630536348346107No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11480.2331949330884922No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8750.17774004046378977No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG8500.1726617535933958No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7760.1576300244570296No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7520.15275486906145133No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6940.14097324352213728No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6720.13650435107619055No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6380.12959788093245472No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5920.12025383309092977No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5470.11111291672422058No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5400.10969099640051026No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5180.10522210395456355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)