FastQCFastQC Report
Wed 31 May 2023
EGAF00007925238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448978
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23240.517620017016424No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21630.48176079897010543No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21450.4777516938469145No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11000.24500086863944334No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10610.2363144742058631No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA10380.23119172877067473No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10190.22695989558508436No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9140.20357344903313748No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6810.1516778104940554No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6690.14900507374526145No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6120.1363095741884903No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5390.12005042563332725No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4820.10735492607655608No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4560.10156399645416925No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4550.10134126839176974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)