FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494016
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12390.25080159347065684No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8440.17084466899857495No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG8280.16760590750097162No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8150.16497441378416894No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5790.11720268169452001No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5660.11457118797771731No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5620.1137614976033165No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5400.10930820054411193No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5130.10384279051690634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)