FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494150
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7760.15703733684104018No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT6510.13174137407669734No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6210.12567034301325508No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT6080.12303956288576344No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5710.11555195790751796No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5680.11494485480117372No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5200.1052312050996661No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)