FastQCFastQC Report
Sun 21 May 2023
EGAF00007925242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494150
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13830.27987453202468887No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8480.1716078113933016No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8040.16270363250025296No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG7830.15845391075584336No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT6050.12243245977941922No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC6030.12202772437518972No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5720.11575432560963271No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5640.11413538399271476No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4990.1009814833552565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)