FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481214
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7750.16105100849102477No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT6230.12946423005149477No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6060.1259314982523368No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5710.11865822690112922No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5610.11658014937221278No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5510.11450207184329633No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5260.10930687802100522No Hit

[OK]Adapter Content

Adapter graph