FastQCFastQC Report
Wed 31 May 2023
EGAF00007925245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483238
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC10800.22349235780298732No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10440.21604261254288779No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9280.19203787781590023No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8460.1750690136123401No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8180.16927476729892932No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8020.16596376940555171No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT7210.14920184257032765No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7190.14878796783365544No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6340.13119829152508702No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT6090.12602485731668453No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6020.12457629573833183No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCG5960.12333467152831523No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5900.12209304731829863No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5750.11898898679325715No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5520.11422942732152687No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5490.11360861521651858No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5390.11153924153315757No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5380.11133230416482147No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5040.1042964336413941No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG5000.10346868416804969No Hit

[OK]Adapter Content

Adapter graph