FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462024
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10100.21860336259588248No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC10090.21838692362301523No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8950.19371288071615328No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7780.16838952089068968No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7680.16622513116201756No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT7540.1631949855418766No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7520.16276210759614218No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7430.16081415684033729No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6350.13743874777067858No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5870.12704967707305248No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5820.12596748220871642No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5710.12358665350717711No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5670.12272089761570827No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCG5650.12228801966997385No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5420.117309923294028No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5190.11233182691808219No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4790.10367426800339376No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4670.10107700032898723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)