FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462024
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23840.5159905113154295No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19630.42486970373833394No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10980.23764999220819696No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC9810.2123266323827334No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9650.208863608816858No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7760.16795664294495524No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA7080.15323879278998492No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT6830.14782781846830467No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6480.1402524544179523No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6350.13743874777067858No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5830.12618392118158364No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5810.1257510432358492No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5780.12510172631724759No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5710.12358665350717711No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG5680.12293733658857549No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5650.12228801966997385No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5610.12142226377850501No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5520.11947431302270012No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5380.11644416740255918No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAGAT5350.11579485048395756No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5200.11254826589094939No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4960.10735373054213634No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA4800.10389070697626097No Hit

[OK]Adapter Content

Adapter graph