FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464566
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5610.12075786863438133No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5570.11989684996319146No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5240.1127934459258749No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5110.10999513524450777No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5090.10956462590891285No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC4780.10289173120719122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)