FastQCFastQC Report
Sun 21 May 2023
EGAF00007925255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451494
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5990.13267064457113495No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5570.1233681953691522No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5540.12270373471186771No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5160.11428723305293093No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5120.11340128550988496No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5070.11229385108107749No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)