FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451165
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22320.4947192268903838No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT22200.4920594461006505No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT20170.44706482107432977No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19280.42733811355047485No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15170.3362406215021112No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT14700.32582314674232266No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG14120.3129675395919453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13320.29523566766039033No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC12790.28348830250573515No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA11600.25711214300754714No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGGCA10780.23893697427770327No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC10720.23760708388283666No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA10550.23383906109738123No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG10120.22430817993417043No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT10060.2229782895393038No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9880.21898861835470393No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9790.216993782762404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9430.20901444039320427No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC8830.19571553644453804No Hit
GGTCTGGTTACTGCTAAAGCTGTCATCGATGCA8300.18396817128988285No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT7590.16823113495062783No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6890.1527157470105172No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6380.1414116786541509No Hit
GAAGCAGGTGGCACCAACACCACCCCGGCGACC6180.13697871067126216No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA5840.1294426651003513No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGGAT5690.12611793911318475No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5590.12390145512174039No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5530.12257156472687376No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5190.11503551915596288No Hit
ATCGATGAAGACAACCCGACCGATAACGGCAAA5160.11437057395852959No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5150.11414892555938515No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5140.11392727716024072No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5060.11215408996708522No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC4910.10882936397991864No Hit
AACCTGTCCTGGACCGCCAAAGCGGACAAGTAC4720.10461804439617435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)