FastQCFastQC Report
Sun 21 May 2023
EGAF00007925267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470148
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG16110.3426580566119605No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15600.3318104086372802No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT15320.32585483720020075No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG14500.308413520848754No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14110.300118260632822No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT13690.29118490347720294No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCA11200.2382228574831755No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT11180.2377974595233841No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10900.23184188808630474No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT10830.2303529952270349No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT10760.22886410236776503No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT10260.2182291533729804No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10130.21546406663433643No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG9890.21035929111683982No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9610.2044037196797604No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA8900.18930209210716625No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8210.17462586249436346No Hit
TTTAACAGTAATACCGTTGCCATTGGTGTCTTTGGTAACGC8130.17292427065519794No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7990.16994648493665823No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7360.1565464492032296No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC7130.1516543726656287No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCG6540.13910513285178286No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6490.1380416379523044No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6040.1284701838569982No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC5950.126555893037937No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5740.12208921446012744No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5720.12166381650033607No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5680.12081302058075329No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAA5630.11974952568127484No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5510.11719713792252653No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5430.11549554608336098No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCG5060.10762568382722036No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT4720.10039391851076683No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT4710.10018121953087114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)