FastQCFastQC Report
Wed 31 May 2023
EGAF00007925268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470148
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT24360.5181347150259068No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21880.465385368011775No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20370.43326782204752545No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16220.3449977453908131No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT15930.33882947497383803No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG15210.32351514842134815No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14230.3026706483915703No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC13960.29692777593438663No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA12860.27353088814586046No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT11440.24332763300067214No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGGCA11410.24268953606098506No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11350.24141334218161092No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG11050.23503237278474012No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10880.23141649012651333No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA10440.22205773501110287No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10310.2192926482724589No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9950.21163548499621399No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC9630.20482911763955178No Hit
GGTCTGGTTACTGCTAAAGCTGTCATCGATGCA8580.18249572475050407No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT7370.1567591481831253No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG7060.15016547980635886No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6610.1405940257110527No Hit
GAAGCAGGTGGCACCAACACCACCCCGGCGACC6370.13548925019355607No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6270.13336226039459914No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGGAT6260.13314956141470344No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA6030.12825748487710253No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC6000.12761938793741545No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5810.1235781073193973No Hit
ATCGATGAAGACAACCCGACCGATAACGGCAAA5630.11974952568127484No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5590.11889872976169205No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5310.11294315832461267No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5230.11124156648544714No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4900.10422250014888929No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC4750.1010320154504539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)