FastQCFastQC Report
Wed 31 May 2023
EGAF00007925269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455695
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT15770.34606480211545004No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15700.34452868695070166No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15650.3434314618330243No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14290.31358693863219916No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG13850.3039313575966381No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT12980.2848396405490514No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCA10720.23524506523003325No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT10600.2326117249476075No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT10590.232392279924072No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT10100.2216394737708336No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT10080.2212005837237626No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG10010.21966446855901425No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9810.21527556808830467No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9130.20035330648789212No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8540.18740605009929887No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA8440.1852115998639441No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8180.17950602925202164No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8120.17818935911080877No Hit
TTTAACAGTAATACCGTTGCCATTGGTGTCTTTGGTAACGC7790.17094767333413796No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC7070.15514763163958348No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6960.1527337363806932No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6600.14483371553341598No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT6300.13825036482735162No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCG6130.13451979942724848No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5780.12683922360350672No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC5690.12486421839168743No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5560.12201143308572619No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5520.1211336529915843No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAA5450.11959753782683592No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5440.11937809280330046No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5010.10994195679127486No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCG5010.10994195679127486No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT4990.1095030667442039No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT4680.10270027101460406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)