FastQCFastQC Report
Sun 21 May 2023
EGAF00007925270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455695
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT23970.5260097214145426No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21720.47663459111905987No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20230.44393728261227355No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19490.4276983508706481No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT16130.3539648229627273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15850.34782036230373387No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13970.3065646978790638No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG13940.3059063628084574No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC13100.28747298083147715No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA12480.2738673893722775No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG10920.23963396570074286No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGGCA10880.23875618560660092No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC10720.23524506523003325No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA10600.2326117249476075No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT10200.22383392400618835No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10090.22142002874729808No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9770.21439778799416273No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9230.20254775672324693No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC8950.19640329606425352No Hit
GGTCTGGTTACTGCTAAAGCTGTCATCGATGCA7960.1746782387342411No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT7050.15470874159251255No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6910.15163651126301583No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6630.14549205060402243No Hit
GAAGCAGGTGGCACCAACACCACCCCGGCGACC6210.13627535961553233No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC6050.13276423923896466No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA5960.13078923402714535No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGGAT5890.129253118862397No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5800.1272781136505777No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5780.12683922360350672No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5450.11959753782683592No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5380.11806142266208759No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5220.11455030228551992No Hit
ATCGATGAAGACAACCCGACCGATAACGGCAAA5200.11411141223844896No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC4640.10182249092046217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)