FastQCFastQC Report
Sun 21 May 2023
EGAF00007925271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481917
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8900.18467910449309735No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7480.15521344961891778No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6530.13550051149886805No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6210.12886036392158814No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5580.11578757337881834No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5150.10686487507184847No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG4830.10022472749456858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)