FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481927
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8750.18156276780508251No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7260.15064522220170276No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6810.14130770842886992No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6190.12844268945296694No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5560.115370170171001No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG5120.10624015670423115No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4940.10250515119509802No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAG4820.10001514752234261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)